Summary Statistics

Plots

Histogram of read lengths

Histogram of read lengths after log transformation

Weighted Histogram of read lengths

Weighted Histogram of read lengths after log transformation

sub3_full.sorted.bam

Yield by length

Read lengths vs Average read quality plot using hexagonal bins

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation

Aligned read lengths vs Sequenced read length plot using hexagonal bins

Aligned read lengths vs Sequenced read length plot using dots

Aligned read lengths vs Sequenced read length plot using a kernel density estimation

Read mapping quality vs Average basecall quality plot using hexagonal bins

Read mapping quality vs Average basecall quality plot using dots

Read mapping quality vs Average basecall quality plot using a kernel density estimation

Read length vs Read mapping quality plot using hexagonal bins

Read length vs Read mapping quality plot using dots

Read length vs Read mapping quality plot using a kernel density estimation

Percent identity vs Average Base Quality plot using hexagonal bins

Percent identity vs Average Base Quality plot using dots

Percent identity vs Average Base Quality plot using a kernel density estimation

Aligned read length vs Percent identity plot using hexagonal bins

Aligned read length vs Percent identity plot using dots

Aligned read length vs Percent identity plot using a kernel density estimation

sub3_full.sorted.bam

NanoPlot report

Summary statistics

feature
General summary
Average percent identity 88.4
Mean read length 717.5
Mean read quality 9.8
Median percent identity 88.9
Median read length 570.0
Median read quality 10.0
Number of reads 2,705.0
Read length N50 1,069.0
Total bases 1,940,768.0
Total bases aligned 1,800,180.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 2705 (100.0%) 1.9Mb
>Q7 2590 (95.7%) 1.9Mb
>Q10 1339 (49.5%) 1.2Mb
>Q12 157 (5.8%) 0.1Mb
>Q15 1 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 17.0 (194; 8304fa77-b338-40dc-92fc-7fe1267ea322)
2 14.0 (1065; 5aa6fea6-ed62-4f1b-a45e-5cd08af36cc3)
3 13.9 (107; cd401ce5-fa9d-40b4-8bb8-4526ec3316f1)
4 13.6 (1097; f0696aab-f5c4-4375-bbad-e42981df53d3)
5 13.6 (113; 15d399e1-bff1-4451-9561-5d6035386fdc)
Top 5 longest reads and their mean basecall quality score
1 3019 (10.7; 3c2580da-ce9f-4997-8ee4-8ab2341d5cc7)
2 2988 (11.5; 860e9c82-380a-4e02-968a-7a274972d1ac)
3 2979 (12.2; 6a287cc1-3c00-4ab9-8897-12a0ce685c18)
4 2941 (11.9; ec3e1462-4aa5-4d76-a098-d501e3c255d6)
5 2887 (12.4; 7f89e506-3d0e-4090-8a50-3547221831ab)

Plots

Histogram of read lengths





Histogram of read lengths after log transformation





Weighted Histogram of read lengths





Weighted Histogram of read lengths after log transformation





sub3_full.sorted.bam





Yield by length





Read lengths vs Average read quality plot using hexagonal bins





Read lengths vs Average read quality plot using dots





Read lengths vs Average read quality plot using a kernel density estimation





Aligned read lengths vs Sequenced read length plot using hexagonal bins





Aligned read lengths vs Sequenced read length plot using dots





Aligned read lengths vs Sequenced read length plot using a kernel density estimation





Read mapping quality vs Average basecall quality plot using hexagonal bins





Read mapping quality vs Average basecall quality plot using dots





Read mapping quality vs Average basecall quality plot using a kernel density estimation





Read length vs Read mapping quality plot using hexagonal bins





Read length vs Read mapping quality plot using dots





Read length vs Read mapping quality plot using a kernel density estimation





Percent identity vs Average Base Quality plot using hexagonal bins





Percent identity vs Average Base Quality plot using dots





Percent identity vs Average Base Quality plot using a kernel density estimation





Aligned read length vs Percent identity plot using hexagonal bins





Aligned read length vs Percent identity plot using dots





Aligned read length vs Percent identity plot using a kernel density estimation





sub3_full.sorted.bam